Scaffold Ga0078117_1002355

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1002355
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56956
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (14.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029719	Metagenome / Metatranscriptome	187	Y
F045705	Metagenome / Metatranscriptome	152	Y
F079968	Metagenome / Metatranscriptome	115	Y
F085584	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100235526	F029719	AGAAG	MASIKKLLRSAPRLRNTLPQNITRGNGVKNPQKASAYVGRGVLKNGDTITSIKGSISPVPNGPLIKRKGIVRGVSVKGSTLKTGGRVKVMAGGEKHIVYKAAKNYTKGTKGDIMVNHPTKDKGKWDTINLTRKAKAKTVKQGVAATKKWHRDNPNYKYKGKKK*
Ga0078117_100235534	F085584	AGGA	MSKLILSLEDENTSLFSKQYLSLVELCDEIEKRLDELQTMDKRKKKELKQAKQDVNFLIDMYNAKAKFKTYNRVK*
Ga0078117_100235550	F045705	N/A	MEMMVEDLQLGDEFLYSVQGTIARAKIIRPVEVKKVQPTYRVNNKVYYKAVKVKVAMKEITYTTNWGGNNRTFTKKEYCASDKYTVEKFIDLNHRNVWLIKRED*
Ga0078117_100235576	F079968	N/A	MVGTIFRKHVERHEMGTAGNSMYQSWKVVADLGDGVYSCVRVDSTNDPLGTASPQKRTFKLQDIINHLKKEQ*