NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1001391

Scaffold Ga0078117_1001391


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1001391 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14651
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004051Metagenome / Metatranscriptome455Y
F005177Metagenome / Metatranscriptome409Y
F007363Metagenome / Metatranscriptome352Y
F015208Metagenome / Metatranscriptome256Y
F015730Metagenome / Metatranscriptome252Y
F017484Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_100139115F015730AGGAGMLTQNTLDKIVYEYQHGGVKNYHPEISMVERKALLKYLFSLPSKCSPECEATHTA*
Ga0078117_100139120F017484AGGAMLEIFEMNENGAGWVSLENASTSTKLDLELALLTKAEVKMLCFKCHVEIPRGNVCVNHKNVRGAVYFAD*
Ga0078117_100139122F007363GGAMSVAFGKIATLTKGKLMRGYSIPDLLVDQYYAPTSLRRRFNGGIINYAEKREDTYPAEGWLDFAIRYRPTGSINDEWATVSVRVADY*
Ga0078117_100139125F015208AGGAMYKITVSYDEQPAHYTQQFSDELEAHKSFAKYIDWGFADEYSTVNLYTPSGKCYTKIFYREGRKVVEK*
Ga0078117_100139131F004051AGGAMTINGYTYKVGDLFTTLKSKKTGIIKEIIPNASGSVRILLEMPTKETRWTSVSAETLAN*
Ga0078117_100139133F005177N/AMKNRYRVEIFDEVKSNDVTLYFNEGVNREHLNELVFSNLRNFSGNVKAYVYDSLKKKKTVAMFLPIEIVNMNRPKITTAQELGLA*
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