NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1001337

Scaffold Ga0078117_1001337


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1001337 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107737
Total Scaffold Genes216 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (21.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F010397Metagenome / Metatranscriptome304Y
F011298Metagenome / Metatranscriptome292Y
F022636Metagenome / Metatranscriptome213N
F071998Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_1001337112F071998N/AMNNELIAKALKKFPKAKKIAVENFTMGYNELSMEASMNLEMDASLYKWNAHTTNAIRYVLQHKHAFKTMAD*
Ga0078117_1001337113F005293GAGMNDTVTPFVPTRFVPTRDDLIGYISDIYKEINGFRPRPDWSMLTYEELDKWGRELSAEAILHRKQQVQWARLARKLRRARQRAWVQKKRTYFTPVTFTLGMLMPT*
Ga0078117_1001337165F011298AGGAGMAHFIKLNVLDPSHDVNSNKREYIPQLINLDMVVSVEPSKVHSLVFVKNNQQPIRVKESLDEILSLSKNCNEKTKING*
Ga0078117_100133719F010397AGGAMNVNEFERTKPVVTMKKINDLLRRIEEERVKTEILYRDRVRSLDEIKVTIQDLKSSFIKGE*
Ga0078117_10013379F022636N/AMSKYRKATLEELSAIGYVPNKTKYEKHIAFAQKYYPSNAATMVISIHSEYNDNTYDNSTRYVIVLDKDGNELPPLKATAKKCRDEWYSLPIPGTRSGGYSTFETDEHMDDVVIPLNATIPEFYVKED*
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