Scaffold Ga0078117_1000951

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1000951
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3635
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037190	Metagenome / Metatranscriptome	168	Y
F084246	Metagenome	112	Y
F103128	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100095111	F037190	AGGA	MDRYLVIDLTSEGLAFETAHFDFYATWLGIGIAIVSVVAYKIYRTRKGK*
Ga0078117_10009514	F103128	AGGA	MNKLYIDQITRYMNSAKIEFQNYYDDMAMATGALRWMVARLENELGNCHGVENNKCYFYWKHEDCNRLMALLADLTGDDKYLPKPMRGNSWD*
Ga0078117_10009519	F084246	N/A	MDKIEDTNCFSYKVEMIIQVLAENEETARMQLDDKGGYVTTRRVKLMDSVPVYNGVKK*