Scaffold Ga0078117_1000713

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1000713
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39179
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (91.94%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F003456	Metagenome / Metatranscriptome	485	Y
F008237	Metagenome	336	Y
F012001	Metagenome / Metatranscriptome	284	Y
F012770	Metagenome / Metatranscriptome	277	Y
F014237	Metagenome	264	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100071325	F001706	AGTAGG	MNLHQIQKHPEYVEGCFGCKIGTLELGTGDATRDIPDKKWNSELQAYRDARAQGIQPAGTTRAHVEAAYEASATLGKAYNAETMPKTKDINKKTTEVLKEIGAV*
Ga0078117_100071330	F001599	AGGTGG	MEQETVAVAWCDGGDVDGKFMQGVTDVLLKSGVKFETSIRSQGNQIARQREKVIKFWYENNISEWLLWVDSDIVLSPENFLKLWNRKDKDEKPLLTGVYFTTDNPEEPLMVPMPTVYMFAELDGGLGIKRVHPLPKDSFIKVEAAGMGFVLMHRSVVTKIMEVLPGVPFFTEMGADKAFIGEDIYFFALCGKAEVPLWCDTSALVPHMKRFSFDEHYYKAFFGSQEPQKESNLVLPKRYKKG*
Ga0078117_100071347	F014237	AGGA	MDTLKNVMMRILAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFYLSDGNLTAEEINAAFAKVDKKASE*
Ga0078117_100071349	F012001	AGGAG	MFDTNKLKQIGLSYFRAAATAVVALYMAGQHDPKVLASAFIAGFVGPILKALDANSPEFGRKK*
Ga0078117_100071356	F079979	GGA	MIREEEDDMTQEMRALIVLEIKQETEKLIQKIEAAKVPITDEWTDGLNAGLSWAQRILRKDKSAT*
Ga0078117_100071357	F003456	N/A	VSLRGTSIVANPNGRKGSGWEIDFLKLFRSLGIWVERLTKAGKNDEGDIVAIIAGKTYIFELKNVQRMDLPQFWREAEVEAVNYAKARNLPEVPLHYVIVKRRNASANKAWVIQDLDQWIKEKTGDVKD*
Ga0078117_100071359	F012770	GGA	LDFDPNEPPESYCHDCGVQFDNSFELVDHTMEEGEEFDPYYILPNGLKLLLGSLLRFMYNHAEEPEQIKLITQSTYITLFAAEMGFDMIDELVEDMVVKSAMQNLDQNIEKLLSKDTDEEGGA*
Ga0078117_100071362	F008237	AGG	MIEWERIERWDYIVDSVSAEYHKKFEIDLEDIRQSLYQWFVEHPNKLNDWEAIGDKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLPAVLRGEYGAGSKVDLGRPGTPSAPNEGGNMMAMMIEIDYGFWKLPIEDRKVLFLRHAESMDFGAIASELTLGTEDAARMRHKRAIKKLIHKIGGFKPYKDEDSAPSDDSLES*