Scaffold Ga0078117_1000361

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1000361
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55998
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F012775	Metagenome	277	Y
F027851	Metagenome / Metatranscriptome	193	Y
F049636	Metagenome	146	Y
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100036116	F027851	GGGGG	MFQAKSVLSRLLNKTTGIPEVNLNKLPFANKIVGDWEEKSMKDLIKQLPKETIQRLIKVCQEELKTK*
Ga0078117_100036118	F012775	GAGG	MKLFSQMSRPLVALGLKVRLRNWPEDYYIYKEDDKLIDSMGNVFFHSWQEFFIKHQDILNNAGPVWEIYEEVGFNNL*
Ga0078117_100036125	F005589	AGG	MAKFKHSFWRYVPSTEKFKSEFKFVESIETESDSVPEFHDHYCIDHVVDLETGQMRVKNHSAPEYCVSKYVGWSLELPPVEKANKQEVYVVIHRSSFSHKKIEFDEFLEPDQKRYTQEEFQWLLSLIEKKFNKQKEWAKDGIKIPSQYDDGSQVFRTEEEFRAFSLGRRAYFLYHLVNSHKFKHLVRRLNIGYTS*
Ga0078117_100036131	F049636	N/A	MSGIEALKKLEEGYTLRRKAWEPDILCRAYFSDVKEAPEYVPNKPEFEGYISYFDALDNGDFFEDDWEIIDEIL*
Ga0078117_100036135	F090404	GGAGG	MKFSEVVDSLMEGKRVRKTNWESKTAYLTYDKEDNTFDFWEVLDGETCRIEYYSSLDLTPKDLMSDFWEVVE*