Scaffold Ga0078117_1000213

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0078117_1000213

Scaffold Ga0078117_1000213

Overview

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1000213 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11601
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (30.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043910	Metagenome	155	N
F058091	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10002131	F043910	N/A	MAGELYINDRLVDLDQGIPFPLTFNISDIKDLTARKGNKSKTITLPGTRRNYELMLSVFTLSSIDKISDDESDFIDFDPSIKASARYYQNGLLEFNGVAQLMECKLSNGVWSFDVTLVSDTIDYISRLAKIKINELGWSEYNHAMTLTNQQNSWSGLIELNGSPAYVYNSPDWDGRGYYYGLIDYGYTRPTPSTFGVEHIPPQVFVYEILEKAFAYAGIKWSSTFLES
Ga0078117_100021312	F058091	N/A	VEFWKKEAYDIAYKITGGNNLFHDLVPHVFLLLAKLDIKEQDLPRVFARWAYNQYNWKESKFNQLYRGSVPIPDGFDKIADDDMYNESQYQQILDAYLEQSPDNDEELFCKEITKMRLMGMTYREIKGLTGINLDTINKAINKFKYDLHNSSFISGDCQGSPEFGHAQYQTI*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.