Scaffold Ga0076924_1240175

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1240175
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2157
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068729	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_12401751	F068729	N/A	LKFAVNDDTGIIGECLHRAPTKELLETRISHLEPGHTALIIDGAKNPWEASYLTRVYNHEPVPYYQEDVGQLDDDGNSITWEYNWGHVLNQIYYNQELKYINGEFVKPRFRVHQHTNEKVHQTVLDHIEMCDNELSRLVYDEPQRQAIEKCKAGWINMRDNFQHVHHWKLKYPDMPLIKP