Scaffold Ga0076924_1179487

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076924_1179487

Scaffold Ga0076924_1179487

Overview

Basic Information
Taxon OID	3300005747 Open in IMG/M
Scaffold ID	Ga0076924_1179487 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Vineyard Sound, MA, USA - control T14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	725
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_11794871	F049286	N/A	WVVMLSQNGNRSILKMPKYEITRSYTVSCVATVEADSHKHAEEIALYDADVYWKEYDGDYEEDVTIEEIEKS*
Ga0076924_11794873	F002733	AGG	MMVESKTLWLQLTTTEANALMVMLDSEMESQFQYDSLDLREWETLDLEAYKMLAFHKYKTWYTRNCDG*

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