Scaffold Ga0076924_1166364

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1166364
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 761
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F043377	Metagenome / Metatranscriptome	156	N
F058110	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_11663641	F058110	N/A	AIHTITFFKFDDEGNELENEDGTTKEFKLKSVRFKPLEYLCEDLDADYLEPIEEQS*
Ga0076924_11663642	F043377	GAGG	MNDTLNEVIQELADLSYTALDLKEDITTGEPSIQTALEKINKIHQVLIFNQDKLIELTRGEL*
Ga0076924_11663643	F004343	AGGGGG	MTQYKDMIDQARQLLRTEQENIPSMSKNFSKDYWILTYPCGKIVKTYQDKRKKDVVIQESYSGGK*