Scaffold Ga0076924_1147257

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1147257
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13898
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052252	Metagenome / Metatranscriptome	143	Y
F083374	Metagenome / Metatranscriptome	113	Y
F098204	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_114725710	F052252	N/A	MHNFINPQQIRSPYTGETSIPTFNTYDADGKTYEQAVFSDPVTGHIIKKGLVSIKDAKTGEVIQDYNSILSQSTTTQHRQ*
Ga0076924_11472573	F098204	N/A	MSNESKNIDEEYSIDFLARFACLYEGVNVACARAERLGYDTERSNVWIKPTALQKYIEERFLDMKYDMQQFKKGINTDEVYPWDKVY*
Ga0076924_11472577	F083374	N/A	MSLYVKKFSKFLNEQDEELDTEITDTEAMDATLDDETSPSDFDVQAPDSPVANGQKEMYDELNSWIQEMDRFSDYLNGTEGSVQTKLNTAEDDTLFDSISNAETKKIARVAMEISSLSEILKGYLAGANDPKYKYV*