Scaffold Ga0076924_1141703

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1141703
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5693
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010243	Metagenome / Metatranscriptome	306	Y
F048242	Metagenome	148	Y
F072833	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_114170316	F072833	N/A	MKVGDKIEFYLFGILTIGEVYEIDKKNRTVNIKSEDGYNYPKVQTFKTLPKRKKDIPPWYILK*
Ga0076924_11417033	F048242	N/A	MRKRRNIPTVPADFFEDTANKSKYQKILYKSIIEGVEQSLNSNKDKFIMARVNDGRNLKDVEILKDSFKSNLETVLGFYEQNEEYELCSKTLELINKVK*
Ga0076924_11417034	F010243	AGG	MNYKNTYVLMTKPLHQGERGERVNKCVASSLSEAIEMFAVIKQLRPDQLVELYSVYEQPSNGK*