Scaffold Ga0076924_1136629

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1136629
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3244
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F019967	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_11366291	F019967	N/A	MKKVKLESNEIELALNVAAKRFIGNVKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSSNSFYNGSYTDNLERYNDSDFQNNIEIRCQERKDYNFLLIRPGEKKGKYILVIHEGNYEFSILGWFPFINDMPERLTNFGYNNRPAVYKVDIKELYNINDL*
Ga0076924_11366295	F002495	GGAGG	MQNNGSGKQKDFVLFPYDANNEKAIKIDFSGNVTLDNGNKGTILGAKAASKDGKTKFVRVFAQVGVLFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEYKPKQAKTQSKEIPF*