Basic Information | |
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Taxon OID | 3300005747 Open in IMG/M |
Scaffold ID | Ga0076924_1125004 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Vineyard Sound, MA, USA - control T14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Wisconsin, Madison |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5048 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 41.4417 | Long. (o) | -70.7744 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001728 | Metagenome / Metatranscriptome | 645 | Y |
F023607 | Metagenome / Metatranscriptome | 209 | Y |
F042278 | Metagenome / Metatranscriptome | 158 | N |
F062182 | Metagenome / Metatranscriptome | 131 | N |
Protein ID | Family | RBS | Sequence |
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Ga0076924_112500411 | F001728 | N/A | MNDFELRKTKKDHYRFFINGVDVTGEQERSTFRHIVEVIDKGITTGL* |
Ga0076924_11250042 | F023607 | N/A | MHIYKLVFDTEQQGKQVLIDNNVWEEVTEEGVTTMRYINGTKGVVNIGKVINPQATTDPEHPIYYPGYAYDVISTDELELEQYRVYPNGSAAHQFYGYKRDDDT* |
Ga0076924_11250043 | F062182 | GAG | MALLHINSMAIKETMIPRAMTQKEIISEIREEQKSMAEMQFRLAADLSNFFNKQELFNQRISDILENDEKTNKKGLVYKVGEISNRVDKIEIKNKVTAGKIAVSVTILTFIGSAVWKLINIFD* |
Ga0076924_11250048 | F042278 | N/A | MKVNNSLWEALKNTIEMHTEQDPNITDVLINYQVKESNGVKNIIKLNATLE* |
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