Scaffold Ga0076924_1115245

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1115245
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2173
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_11152452	F013088	GGAG	MDNNSKKALWIPEELHKDIKVFAILEDLTIEQATQLLIKLGKVSYEAEKKNDTV*
Ga0076924_11152453	F093807	GAG	MTQYKDAVENQRLKLNKEKDEWYFHVNNGAGYTEVKNGNTLTITYHATGKKEIVIDAD*
Ga0076924_11152455	F038657	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIKYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVVPKPAEEWRRAFSAWVMPNGAEHAYLWQSFSFAESSAFNNICGLFWSDKANNEGKLPVVEYKGSKHIQVGAGNSSELSFEFVKWGDRSFDVPEWYIDPDAP