Scaffold Ga0076924_1094439

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1094439
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5929
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008946	Metagenome / Metatranscriptome	325	Y
F027182	Metagenome / Metatranscriptome	195	N
F085541	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_10944395	F027182	N/A	MANILQQIGTTVKSKLDDKVDKSDAVTDFLKSILGFPEDTVSPEVDTAANITARTSDDQGTIMYGSDTYDLYVFDGSNWQVYNNS*
Ga0076924_10944396	F085541	GAG	MGQSVRNLLISLTSTSKAILDTESNIQARTGDDLGTMAYATDTNKLYVFTDSGWQAAQ*
Ga0076924_10944398	F008946	GGA	MARPTRRPVVRPNPLAFQQRTISAVSSAVATENKEKADNLQSKVTSLESDPFFVTIDGGSPVLDETDIFDGGQADA*