Scaffold Ga0076924_1069847

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076924_1069847

Scaffold Ga0076924_1069847

Overview

Basic Information
Taxon OID	3300005747 Open in IMG/M
Scaffold ID	Ga0076924_1069847 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Vineyard Sound, MA, USA - control T14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18232
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027658	Metagenome / Metatranscriptome	194	Y
F032445	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_106984716	F032445	GGAGG	MQFEPHNRHLWIEPLDKKEEENDMMIIMPDDYKPAQSPYVIGKIKAMACDCDISLDVGDIIVVDRTTIQEIKAENRTIYVVKENYVYGRLHDETY*
Ga0076924_106984717	F027658	AGGAG	MREELEKIILELKEVMEDLDKVEAGSYGFKSAAPRARKALMEASKQLRDVRAKVQEAKKSHEEK*

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