Scaffold Ga0076924_1049282

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1049282
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22541
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_10492822	F003188	N/A	MTKILNPKKRLRQVLFSIHPLSYRIKQRGLDKQSMDKNLFIEVIQQLKKIEDRRDFMNSEIGMDMTAYEDQFFHVIENLMKMHFSKEQLALIQTYLYTLSPDKEWDGTITMEKNKNTKVVPFKTPTQVWEVISNLDA*
Ga0076924_10492823	F001222	N/A	MNKLETYVKEIISEATKINFAGHSFLLKTDTNEDPTKKGVKVQFVPTEFGALSRTEQNDIAIELEERLEKGLAEYDLRVERDRNLKDKSIIGFFIYIEYFDKLVRKALSGSSPEIPVDDQDIES*
Ga0076924_10492824	F020020	N/A	MKKYIVEFTLVDGKVEEIELTTDRLDWSIQQWSRNRAVSSHKIISEGNNNSQQMLFG*