Scaffold Ga0076924_1038017

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1038017
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4954
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018345	Metagenome / Metatranscriptome	235	Y
F026258	Metagenome / Metatranscriptome	198	Y
F049291	Metagenome / Metatranscriptome	147	Y
F050773	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_103801710	F026258	GAGG	MLPDTQHNREQAFEHMYGMPKEWLDELVEDWQEPLMGGLTMLAMSILSDAQECIAVGRHETARQYINRAKYVIKQNDM*
Ga0076924_103801712	F049291	GGA	MRIKTQMKNRIKKVNKKAPKWQRNRMAEQAMRVTIINRAFDLDEPEQAAIATHQGRRYP*
Ga0076924_10380172	F050773	AGAAGG	MELYGILVYLSVIVMPDGELKSYTTTVKECPSTELVMSMHQGMVDRGEIADWSARCTTIQVELSVPKGT*
Ga0076924_10380177	F018345	GGAG	MSIQTINVSFWKQSTGLTGQNLNEDNARKFARVARKFNKKTGLKLSKMAAYRASRSVARELKAEYGSRIVSNSKTTFELLLTGVDKTLDRKNHNIDLGTFDISSITDLACKPTGRKKSA*