Scaffold Ga0076924_1022272

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1022272
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6895
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015097	Metagenome	257	Y
F016393	Metagenome	247	N
F040631	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_10222723	F016393	GAG	MARGEINSVLGMTEGKFRTMIKSALRPCWRNSSRKTFIQSVRQRGINPATGRERFVVVCVDCGKEMGMSEKERRTKIDGTLEKRAKSVYEIDHVDGITPFTDVQTLETLTPHFRDMIYGKQEVVCVACHKVRTANQRKKKSS*
Ga0076924_10222726	F040631	N/A	MNDKALTKYRQVTGACTRFIERHQDKELLEDEAQTLINDNKASRSESDWQVIKDFQDECCRTVYKCTKKGLIEPATDYVPTHPTL*
Ga0076924_10222727	F015097	N/A	MKYTYMLNMDNAKAESCDVVVKFTTDASSEFEGFTSIISEPPLYSDDLAYLEEWVMQGRNDWEPMGTFSHTNRERM*