Scaffold Ga0076924_1018721

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1018721
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3617
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F011527	Metagenome	290	Y
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_101872110	F043623	AGG	MFKRIKKTEDDPSLKEAQSFVKGWVERVVLSTGVLLVDEEALLKQGIKKNKAASFLANKDGYPEILGPAIFIPHEIKSEWY*
Ga0076924_10187213	F011527	N/A	MLVYFQFRRCGYYARGLVEADSLDAASRALWAEHVGTFKWEDQTNDMPENANYLTIEEYKYERSSDGKTEPENEARSQVG*
Ga0076924_10187219	F004220	GAG	MVEKDKLDWAYYFKSIPTWIRLQSKDMTEGFAVRLKDTRVRNHYTKIVDTGVEFYTCDDDDLDKEYGMYYGNLDFDPLEIMAFRNGHTKMFYKENGKWQLL*