Scaffold Ga0076924_1011257

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1011257
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5864
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026258	Metagenome / Metatranscriptome	198	Y
F028350	Metagenome / Metatranscriptome	192	Y
F042075	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_10112574	F028350	AGG	MRIKPNIVNPVARAMAQSRRRTQTVPDQTKYNRKKDKDNANKDRENEESQDK*
Ga0076924_10112575	F026258	AGGAG	MLPDTQHNREQAFEHMYGMPKEWLDELLDDWQEPLMGGLQMLAMSILSDAQECIAIRQDNTARQYINRAKYVIKQFV*
Ga0076924_10112579	F042075	GGAG	MTIHQFTTSEPNPPFAEMRMSSYNDYCFDCDCEAISPIDWGTWKMLVGELIAIRKYSEAAACMYAQKVAFDRYHSE*