Scaffold Ga0076924_1001817

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1001817
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8666
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F067591	Metagenome / Metatranscriptome	125	N
F090175	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_100181715	F090175	GAGG	MSQQEAADSTTKRGAKGRTWADVFVGASYLTGGGLFVVSMAVLLYFLVGEVPGWFFIALLSSLVFIPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLEIEGNSVLFQSNSGVMRQVLTSIDIENKTAIGSEFANATQIDQVRDLTTLQRMVEMLQSTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSESFGIEETSIELEIDDTIEDLVDDFE*
Ga0076924_100181716	F009527	GGTGG	MKRNSFPPSIVNLLLQEGQRWKVDGSMREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPSHWAGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDSDLIPQERKEWKGEIEHGQWELRKICKDIRFRDYFWSAKDGMLVKAPFPKFLSKEVDPRKADLLSRPMRYHSIEDKEVMLGIVKPPQKRRQKRKKVEQ*
Ga0076924_10018179	F067591	N/A	MVLFFGFIPLYPLTNWLGITRLIIMATWQTQVKQISMALSVVGALWMALTVGLGDAFNIVTDPASVDPATAASLGGIDFIDRVAVAGVFVTLLGGAGFGLVSVSGNNPPALNTILRYAPMIIGFVAFSAFGSEAWDLISGNRTWANYDDVQNSYMLFLAASLTSAVVGLIDRR*