Scaffold Ga0076948_1160944

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1160944
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1577
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F021535	Metagenome / Metatranscriptome	218	Y
F083783	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_11609444	F083783	GGAGG	METEYINRKKQLVTYLELHSMSLNQDLSNLSARMDSLDPASKEFRGLDEEYNYTSGQVSATMHILDYVEEIL*
Ga0076948_11609445	F000868	GGAG	MPSFLDDENQMVIDAELQVIADHLLTEWINSNLDEGQLYSDYQIASMCDSNYLKGRFNQFYDLKPEDQYYLEVNE*
Ga0076948_11609446	F021535	N/A	TLSFEEETGWGGECEFLRGKIISMSEYENKCRDCDSDDTMEYCDNDCGEICSSCNYLGEADLECVKECQTHKIYLDSEHVPDYRMEQLNA*