Scaffold Ga0076948_1130793

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1130793
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1754
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006300	Metagenome	376	Y
F020893	Metagenome	221	Y
F040084	Metagenome	162	N
F090339	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_11307932	F090339	GAGG	MSDTTPNNGNIGNAVHILAPGTTWRLWEPGTQIENLEWLDDPALRPSDAAILAKTAELDAM*
Ga0076948_11307933	F006300	GGA	VKWAPILEDWLKAFVAGSAAVFMTGNYDLENALKTGLAAVLPMIYAWANTKDTRYGRK*
Ga0076948_11307935	F020893	GAG	MPTEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRRILARVERKIDNHLEDHDNGVTRRNKNQTK*
Ga0076948_11307936	F040084	GGAGG	MALRDEIRTKQNRLADLTIWLDAQPNGEEWYEIIYDQQYSSQAVAGLLTKHGFKADANLIARFRNKHVAK*