Scaffold Ga0076948_1125550

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1125550
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2321
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032194	Metagenome / Metatranscriptome	180	N
F046894	Metagenome	150	N
F060717	Metagenome / Metatranscriptome	132	N
F073146	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_11255502	F046894	AGGGGG	MDKYDYWLESGADQECMDTKQEYVWVTHMQPGKPCDPMDLDNFQEYLLEATASYAGFEKWENLRQYADRGEWEKFGRAIYYLVHDHIENKLMSEEE*
Ga0076948_11255504	F060717	AGG	VKLADNQPDNVCFDCGEQWGLKPLKNGESHRIWIDQCDVCSKLTAVADASEYGYMKEGWDGNKVVS*
Ga0076948_11255506	F032194	AGGAG	MRNKHCMEAFYKTLKEVDIPAGQSMVCEHFFACGWDAAIDALSLAYQRQFENDGVDTQLIRREPQEPPPDDDQE*
Ga0076948_11255508	F073146	N/A	MQDEPVSQAVMIITETEPCRFSVEIEGSETSLEVAQIMVKFLSDCLEQIHRETKVH*