Scaffold Ga0076948_1083783

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1083783
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4130
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015093	Metagenome / Metatranscriptome	257	Y
F031485	Metagenome / Metatranscriptome	182	Y
F096229	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10837832	F015093	GGAG	MRIQILRNTIVDLKEVKVGDFVETDQRSALLLIGIQKAIPAPLSQEVVVTADEQPESVQSKPAPKRRKTNDPQPGV*
Ga0076948_10837834	F096229	N/A	MAISDTLAFLNVDEFGVTCQIGAGASFVGILDSPMEVLAGGMALSREYLLYAKTSDVSAAARGTAITVDSASYTVRENRPVDDGLFSELLLSKV*
Ga0076948_10837837	F031485	N/A	MAKIEKEVPNPGVGGSYLFDPKTGKLTLITEPAAPTSNGTDSEEVSDCED*