Scaffold Ga0076948_1077567

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1077567
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F015211	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10775672	F004838	N/A	MISAQDKILHVANKLGLTSLKDMQASTGAVYDVDTELSGTIFSQAARHANPSVTNINENQFEVNEALLVETIAFYVKSAGGSVQNFQSIYGSAAVIVFDLVIGNKRVMKDTPVFAAGSPYTFANAAQFRQTFGEDTPTVYAPRHQVYMEGAGILIPPQVQWYVSYTVYDVVTGAIIAPTDTTNIGCYLFGTKVNLNFNTSI*
Ga0076948_10775673	F002287	N/A	MSQVSKLSFVDGKLGGPTSGQQTTRVLFNTIEAPGTTSSLTFFRNFQGLTNGQTNLTQNKLDSMESMVIKTIYLAQFDTTPRLTLFGSAAQQTVSIIVGNQTVVKNLPIQFNQGNAGQSFDRLHENAGAVADNVTGGGQFAQAVQPVEIRLLTDIVIPPQVAFEVRIDSNSAAYGTGAVLCALAGYGKIFSAGNSF*
Ga0076948_10775674	F015211	N/A	MAQVNMISYRQGVRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSTTSAAPGTLVNALQLRVTLTINN