NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1066971

Scaffold Ga0076948_1066971


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1066971 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3709
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F048123Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_106697112F048123GAGMKPRYDFNKAKLISYDGEIIEFADSKVVDKYHYQVEEIMSLFNLKKGEYLITDESTIGDFGKETINKNALQKFKKKYGFSLTNKSNISKIAERMYNFRPF*
Ga0076948_10669715F024040AGGAGGMNYYVSGHNWSAKVKIDQSVDEADRYSEACTRAIEAVLDQEEKEGVKLKIQDYDDFGLGVILLTWEEKNAKNIGEHRVLLTSNILANAGRWEEYRFVKDYENKCKTEGL*
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