Scaffold Ga0076948

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1058161 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005739 Open in IMG/M

Scaffold ID

Ga0076948_1058161 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8880
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (60.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8880

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (60.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F032652	Metagenome	179	N
F033013	Metagenome / Metatranscriptome	178	Y
F038240	Metagenome / Metatranscriptome	166	Y
F056612	Metagenome / Metatranscriptome	137	N
F088884	Metagenome	109	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_105816112	F091645	N/A	MAIDFTALFPEEPQPNHGPGMSYCIAPNARMFDYELVTPGECRLRGCLRAVDQEDAKRILLNRHPGATQIIIGPGRRISSPSKKA*
Ga0076948_105816116	F011666	GAGG	MQPSTLMEWHPIERTQESHFSEIATAKMLDEWLKQGDIKGIYNAAILLNTMLHQQRTMTKWLAGEAARNLGRPELADEMLQQAITQPE*
Ga0076948_10581613	F032652	AGGAG	MAIVELSSALVDQCKLCAQQRDHNRRNSVDYSSDRTDDKSIWSFMGVLGEVALLTYFELEIDWEYLSTDKGFCGVDVSDIWEVRAMSKFGNRLFLWSDEATKPNKLSYAWSKVVVDPTTGYCNVCGWAMGYEIAIHGIHGQYDCKRSSYFLDNNLLRRHCNPNWDQFFAAKYYNLFNQINETNI*
Ga0076948_10581614	F088884	GAG	MKLYAPEHAGKYVWQCADAKTRAVSYTAINSTSPPPDAAYGHPMGRYDSDGCYWTFIPNAGDEDPNSLRSARFAKHPLADQEMQAAIKAKVWGSLNSFGSYKETEF*
Ga0076948_10581616	F033013	N/A	LGYGTQVLQPFPMAIQLTAKASSTKTVMLQLDPELYVRIKAAAKHYNMPAAAAMRQILEQGIDEVEANIA*
Ga0076948_10581618	F038240	N/A	MATPAGNKMRVQVLLDPEALVMLEREVQLRYNTAHRVTVSSLANEIIKSHYAILDPEHE*
Ga0076948_10581619	F056612	N/A	MSDFESAFDAKFTLFDVKEKKSDRAPDKTGSLELELSEAMKLAEYLTAHPGEEGYGGKTVIKIPVSAWNQRSQSGTDYISGKLWAKKPERNIAPPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0076948_1058161

Overview

Ecosystem & Geography

Associated Families

Sequences