Scaffold Ga0076948_1042408

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1042408
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8736
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Aurantimicrobium → Aurantimicrobium minutum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023107	Metagenome / Metatranscriptome	211	Y
F042880	Metagenome	157	Y
F043392	Metagenome / Metatranscriptome	156	N
F071220	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_104240813	F042880	AGGAGG	MAGYTTIGDLVRNLQEENQDAPIIYQYYLAEHFDTTEENFANVAEYFDSLIPCLDNAYSAISQEVKKHPAVLVKN*
Ga0076948_10424084	F071220	AGGA	MPKGTVSTKVAVRETTTELKAETKVVSLDKTNAKELLEKFEANKVNKATLEAEYKALQAEIYALLGYKKVGDKWIGVVEEGTIEGVSVVKVGTQTRQNFNKEKFLQENPHLLEIVESFTETNTNTVLKTVR*
Ga0076948_10424086	F023107	AGCAGG	MDEITLSRTVMFVGDYFTLMTTVVLDEKLREEGEEDSDFAVRIASVFMREYYNFDVESVANSIGIVDENGIEVEDE*
Ga0076948_10424088	F043392	N/A	VKIVSKDYHSNGSASPFIAAIVDDPSDGDTKLVIMFDEHDYVAVLSLDYLIRDEDVSAKYNGHHGEKYEKLREFLWDGFED*