Scaffold Ga0076948_1036090

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1036090
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14046
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (58.54%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F032098	Metagenome / Metatranscriptome	181	Y
F034149	Metagenome / Metatranscriptome	175	Y
F036207	Metagenome / Metatranscriptome	170	Y
F048268	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_103609010	F000744	N/A	MMTETQINLNVHEIGVILSALQLLDLSEERIIAREYGSVPALYNKLYSVYEQMDSSQTGLRNDVVPSF*
Ga0076948_103609011	F048268	GAG	MQLSTQSISKIADALKPAVIDYVSMDERFVEILQTTIIEGIQDTMGDMNEDLLFELGMLIFDRIELK*
Ga0076948_103609017	F004898	GAGG	MNSVELSELIDEIREIELYDTDPADWMGYLDDDNHYVPDVELAY*
Ga0076948_103609018	F036207	N/A	MFNFISGTIFGIIVTTIGFGPVAKFLDGVMFNLQKTTVEMNRPPLPPPH*
Ga0076948_103609028	F000345	GGAG	MDEKQPNDFGKALQEWWDSDTFKEMQKANEEAKQRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGCSHRGLQDALGIYPVGFWVDHLMDVHNSLWSYYHDKKQEQELKDDLDVLDNFLDSKD*
Ga0076948_103609035	F032098	GAGG	VENSDFPYHTLDPTTSWYEWICYCEICHQLGIKDQPSVQRFMRYNAYLKEIGVK*
Ga0076948_103609038	F004546	N/A	MEHTEEFPFDQFPYKLVHKEGKEVRKCYFQTEEHRQIHIDRYKLKKKDIKLSCKYD*
Ga0076948_103609039	F034149	AGG	MSISQGLVMDADEEPGFEILHLSFRKQESEAFSGAPINYYIGNIVFRLTNEDAINRVKYYMEKNEELRVAPDKDLLDSYYEDLHFVFDDEEELDEEKDGEKYTPLQILNKNGIKEEDVFIRAYRRNMMPLHDFIRYHEKFGVYSMREYFQDTPVVRGIIQYLQDMKDGKENPSRTVYYEQFLNTLENLCWWWD*