Scaffold Ga0076948

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1031400 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005739 Open in IMG/M

Scaffold ID

Ga0076948_1031400 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4207
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4207

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10314002	F018171	N/A	MANSQGRVYRFGSPATLALYNSAGNLVVTLYTSPDMESYDLTHEADTEEVRNSSGEVVGHITYNNRLTLTVNFIPAGANAADALKAMASPDANGTCVITGAPAVQCGPYEDAINAPGSPGTGPGGRWIYAGGASLKFTQTGKVTGTITLKRYAGMGTTVTGGATTL*
Ga0076948_10314003	F006107	N/A	MNAVALRAEKAVADYLAAADWSASSIGAPTCLTSYSRGLYDDPDLQDTMPNFPRIIVSTNSARPVQRTDLTCEVEVDVELQLSADDTDESAALSIVRILDDRILPLFDDTGASALDAAANNVDGPFTAQFAAPLDFGASSISNRARTFTRTFSLYCSATI*
Ga0076948_10314004	F005024	AGGAG	VRPAVYMEVDTSRFDAALKQYLLTTRRDLHKAINARFFYLMVRLFVLVPPRSPGQERRRISDYLGKPLGDINRKSKKTGKRIGRSRLLRRVHLIVQAKEAQAGRRGLYGQEMKAMASSFMRKSIASVGYLRSAVVKAIRVYNRGFTQFDRPKWKPLVKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTRARGFQAVPGYNPTATIVMTAGIADNQYNRVASIYNPAMQRALDDETTELTNHMTEALLANGKVLEDNGFDIK*
Ga0076948_10314005	F009398	AGCAG	MTVLQQMLGAPMFIWEGSSIRCIPAAVTDGNTPVPGGFQDNVTSRILVKFSDWKTFDSTLVSMDTTLYTLDQGTEFSRLLKEDGFYLLQENTDRLALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0076948_1031400

Overview

Ecosystem & Geography

Associated Families

Sequences