Scaffold Ga0076948

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1019543 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005739 Open in IMG/M

Scaffold ID

Ga0076948_1019543 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4474
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (22.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4474

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (22.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_101954314	F035200	N/A	MVLRDGVRVSDDMHDREEDAEHEANFWREIIKRWPDGTKVTIKKIGG*
Ga0076948_101954315	F010746	AGTAG	MTYYCSVSGEALPPERVEALQVLGVPEPLWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGNLFDNEVIAETDNDI*
Ga0076948_101954316	F016115	GGAG	LKILEESFTSKGFKLQQVKRDGDVAIYKKQLDDPESDSSHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFDYLQDKLKNYNATSILPSGEKRGRGRPRKIALTENQTQVE*
Ga0076948_101954317	F020860	N/A	MNITKVKKLAEGGYALFSIDPKTKQETQVGYMGENLDPKGWLPEGVKIENS*
Ga0076948_10195434	F022820	N/A	MKHENRISKMLEKRVLQDEDPKLIAQIDKYLKELELVFVKWAKAHPNWKESEE*
Ga0076948_10195439	F007359	N/A	MQLVKQNLGAHWVIGIKGKPSDIEQFHNRIYNWGGTNGELQWMSDSFAYFWITLEKLERVMFKYTMNSLSEKLGQKFRGTKGGLKQVVLNRVKNTINSIPVESFVKTAQIQDFYTIGQVSAEKLDNDS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0076948_1019543

Overview

Ecosystem & Geography

Associated Families

Sequences