Scaffold Ga0076948_1019509

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1019509
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9673
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (26.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F022872	Metagenome	212	Y
F027829	Metagenome	193	N
F035741	Metagenome / Metatranscriptome	171	N
F041161	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_101950910	F004838	N/A	MALSAQDKILYVANKLGLSTLGNMQGSTGAVYDVDTEISGQIFSSASRHQNPSITNVTENQFEVNEALLVETISFYVKSAGGSVQNFQAIYGSNAVILFDLVIGNKRVMKDTPVFGSGSPYTFANTAQFRQTFGEDTPTAFVPRHQVFMEGAGILIPPQVQWYVDYRVFDVVTGATIPMTDAGTLGCYLFGTRVLLNFNTSI*
Ga0076948_101950915	F041161	GGA	MPYKNLVHTLRMMGKQVAESVEFADQFLPYHTTPQEIWAILKDNLIYKNDPPGVELLQSFPSLMNDNYWGTPGAGDCDCFTIAALACAAARNIPARAVIVGNNGEAPTHIYCQYLVNGRWIDFDLVSSDYGVTKPYKYRQTLKLH*
Ga0076948_101950916	F027829	N/A	MSFTNRFEADISPKKTRIDAKAYQQYIDIPIGQNPETGKQYTFRAYIAVAKMQKKLNYKPTTLITLTFFKYKLHLQTRDIDALNSAFRKLSSFIDLQESNLKQKLNQELMTYEEWEQEYLERKKNGILSINR*
Ga0076948_10195092	F035741	N/A	MTAADVIGKYLIAEVDVPIFAFPGGSQIGVVKKGLIAGPVFSWVEKSGKLYWAFDYTIPGQAPGSYYAEHRPSYWKLSATGAPSGVPTSITPSGLIPKWALPVGLGALALFLFK*
Ga0076948_10195097	F022872	N/A	MSWSIPTKIEEDFISGKAQYRTFQTGVGGQSILPVPNNAYAVVFGYDFSPAGGGFKRNTVAPAITGVGPFSQINDLFVRYFETQQISFYTGTDFYPFIHHIDVKTTIAGLTFNNTNPADSFVTNFQANEEIDNTPISRQVYITSDKDITISVGLILDSDVASQNAIPQTNRTPALLTYGGSGQVVATQTDFGPAASPIQFMQPSPKDYQDFGFGLLPNGASGQAFATPDTARGLYDPSSLLQILGDNYRDAAACNYFLCLHYALYTQSVPEQRG*
Ga0076948_10195098	F000710	N/A	MATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGILLSSAFTATPQTVINPKQLRITLTINNDVVIDDDVALHYATPATGGFAGGFPFFIPIPRRLTGQDTIQVRLVNAAASQNVDIVVWYRNEL*
Ga0076948_10195099	F002287	N/A	MSQVGKLGYVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIMLAQFDTSPRLTLFGSAAQQTLSIIVGNQTVVKNLPIQFNQGNNGQAFDRLHENGGAVSDNVTGGGQYVQAVQPIEIRLLTDIVIPPQVAFEVRVESNNAAYGTGAVVCALSGYGKIFSAGSSF*