NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1014060

Scaffold Ga0076948_1014060


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1014060 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10778
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F005878Metagenome / Metatranscriptome387Y
F009683Metagenome / Metatranscriptome314Y
F019642Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_10140603F005878GGAMDVSTVINEMHPFKCGPCKKVTPHRGITAYESEIEPGEMVWLMECQNCFEQRLFDPIDRIVNREDEITRCDQCGNYKMKAAKCRICKIAAGQERIKERYWNGNATLERFIDADI*
Ga0076948_10140604F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLASNCDVYIVKTELYRTEADPAPWTTGLSSESKQKQYALELAETGSLGRALNLAGFFAKPSGTPKKPIQTTKPELAEFVKEQRPNDPEPIVWDVSEIAKELGGEIVDEIPLCSGGDGPMVLKQGIKEGKEYRGWVCPTPKSGHQARWMRIGSDGKWTFQR*
Ga0076948_10140605F009683AGGMSERELNEWIDDARNTLEDRGYEYGDPRSNLLRIYKIARELGVQLRDPSDVAIIFIATKLSRMVASPMREDSYLDLIGYSGILALCRFSTPEDWDDVEFKSQS*
Ga0076948_10140609F019642N/AMDANTIAGFVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALSKKVAKGGSKAR*
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