Scaffold Ga0076948

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1011459 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005739 Open in IMG/M

Scaffold ID

Ga0076948_1011459 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26204
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (82.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

26204

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (82.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F074795	Metagenome	119	Y
F088817	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_101145915	F008812	GAGG	MIQWLGVLVAVLGLAYTGFKDYQKGDIKIPQLTKPVYPIQYCLMAYDPNVDKVFYQHENGQWYDYAPQQRRYPSTQEHYQNQNQKALGVAYGTSGGSSGHVIR*
Ga0076948_101145921	F000325	GAG	LRQSGPAGFSVNPYATMVYVFQEYPLTMPITYSRIGRHGENTMKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEETEKIYPNVRPAGMQNLVTEKNKIRAMILDAKRRKKSIRWHERGDWFLNGELDVEYVANVTWACESILADGDTLPDMWFYTHIYDDRLVSLEKYMNVYASVHDDNDMGEALSQGFKKFAWCDSDEKIAPKRPRGKKKADAWRASLPKLVVLNGTKFVTCPEIRRGRATITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0076948_101145924	F006543	GGAGG	MKKFSFVVDIVADDLDREVVVDSISSCLTDALPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAKAAGDAHNGKVEKEAEAVA*
Ga0076948_101145931	F074795	GAG	MTKAYETYQKNRNSAIIKILQVLKSPMAVMCLPRREEVLTLAEEYGITAKDLIDVWSDLAMRV*
Ga0076948_101145949	F088817	GGAG	MNGYELMAELERVICEMIVVPNDWLPESFRDERTDGVTLADLDKKCDALLDKPTDHQLEKMEKDKRIELYAAMIANGEEITYLQR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0076948_1011459

Overview

Ecosystem & Geography

Associated Families

Sequences