Scaffold Ga0076948_1010984

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1010984
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5003
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F012449	Metagenome / Metatranscriptome	280	Y
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10109844	F004837	N/A	MTQAEYLLAQKHRHYWEQYQAALFMRLTPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADQFAEANQQTVTHALTNTPSE*
Ga0076948_10109845	F012449	N/A	MEVILTLLVSSLTALAIAEYHVLPQWWYQTWLGRHKPFSCVTCLTFWVAALLTLLTCDWMLAPVYGLASAGLTVVILQVTNR*
Ga0076948_10109848	F046337	N/A	MTWTRLTKDTMPIPMEEVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVAAWMYPNPPKP*
Ga0076948_10109849	F005845	N/A	MKPTPTDFRRWQIHIRKACATCLTPDHAETISPWRVNWVLLGHVLNAKKA*