Scaffold Ga0076948_1007390

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076948_1007390

Scaffold Ga0076948_1007390

Overview

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1007390 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1341
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072116	Metagenome / Metatranscriptome	121	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10073902	F090088	AGG	MDKEALGKKIFLEFYSSFILDDEIESTGRVLYLAKKASIIHLNLIKGILQHEEYIDNMAYLKDIVNKINI*
Ga0076948_10073903	F072116	N/A	SFSDEVTNYSNVMQGIFKTFHLQSYKRIEIGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNVTDLTKVSNTITLAGASPQTGTVTGSGSGLVGANGLVINIQLSYNPFLNSSTNVLVLPVNSGITNVSNVNANVMVFQNGQKLLPGVQYSITASTVTIDTNTHYEGANYEVIVNGVTKG*

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