Scaffold Ga0076948_1005142

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1005142
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20665
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.55%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F030735	Metagenome / Metatranscriptome	184	Y
F032628	Metagenome / Metatranscriptome	179	Y
F042298	Metagenome / Metatranscriptome	158	Y
F078619	Metagenome / Metatranscriptome	116	Y
F096710	Metagenome	104	Y
F100847	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_100514213	F096710	N/A	MNTKQLPTQSALVSIQPSSKQDFLYVIKKVNTDTWLPKIPKAVVQNIIKSPGLYNILYRTYTNEKGYDAIFIASAQKVVTN*
Ga0076948_100514214	F100847	N/A	MANYVNIEGNQVIDLTPDYNRPLALVDLTVLNKLTGMLPLESFSNIRHNFREQIMNTNNLEELVQASEDFIAFHRTVNLIREIVSEDVNHILEVKGQERVVGKTETVHIDYSVDEL*
Ga0076948_100514215	F032628	N/A	MLKAIYSGNYIRKEGEHKGETFHIYDITGTSEELKQYMSTPQFKKYPRKSANGTPQMHTMYMDALRDELPLYLKQDGNYTLDQSETRKDTARLDLLNKMGSTVLATAFANKLADKVFGAGKVTSTVASAFIADPVANGDDATLNGDL*
Ga0076948_100514227	F030735	N/A	MTKLIFIWYLVTGTVQYQQTMDGHKQYALFFKDGKVIDYAYKSEILEYIETGTFEYNEDLEFNK*
Ga0076948_100514230	F010462	N/A	MQVMLYQLPNGKVVHLTIEEYLSLTDEDIQYLMSIDFGEHIRDPFTGSAVENNKREKYIDTEFLPMEDYDLNDIPSDDIPFDDIIDLSDSLDN*
Ga0076948_100514232	F000716	N/A	MYKMEKLKQDIRDYQLNGGKTYIQYEQDKYSLYQNYLYKRALYGLSALSEKELATMCGKKKQRIINVYKRAQSVLNIFKQKIAIEYTNKIFLSLFPKANITKDLVSCNETDEKFINTLTFKDLNIDKDQIISIFIAEGVLPKNFLSLKEAPISLPSLKNESQA*
Ga0076948_100514238	F042298	N/A	MGRMKEVYMQILQVNNGIPEDMTVGDFLRMTDLNIYHWREYEREKERARLQLDQQANLGETTEDSEGESTGGEQNN*
Ga0076948_100514242	F078619	N/A	MPDITMCHGFECPVKEKCKRFTSKPSTNWQAYFLEPPYEKTDTSFTCDFYWGENAEAVWKQLNDIMGISLPE*