Scaffold Ga0076948_1003917

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1003917
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3358
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050368	Metagenome	145	N
F090304	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10039171	F090304	GGAGG	MSDKHTMPSCLSKLEQEVQELRVVNEWLRNTIAKRDERIRHLIRLGLETAEYGLQNHREQWQEEEEL*
Ga0076948_10039176	F050368	GGA	MINEEEVRRLPLWKDWIDRNEHRIAYGMVVGIEEMEAALEEKAETMAFQMAVHHIRVTLRHRGMNFSQRGLRGAGFHVLPPGTNADEMEHLNRVALNSLKSAVILGSRTDTSLLTDCERSRLESITEKTANRLALLARSNPGLGHEVAKELTA*