Scaffold Ga0076948_1002882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076948_1002882

Scaffold Ga0076948_1002882

Overview

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1002882 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2473
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021292	Metagenome	219	N
F036299	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_10028825	F021292	N/A	MNHDIISYTPIVYDDGSTINAYIHKLPSGWYAMHAEYPFRAYSDATRTRQVVDALFRKQHRDWFRFIRFQKSSTPQPMPTLNPTKP*
Ga0076948_10028827	F036299	N/A	MLSRSTVIFSLLLLFGCCRKPAEVIRTQAVVHTDRQIVTAGSLTELTLPDLCDSAGVIRRFALRDSTKTSVLSVQNSGSGIVIRLRRDTVVQRFVERDTTIVERTVYVQPKKRKSAWPVLLVGAILGLVVSIVIFARLR*

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