NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0076948_1001617

Scaffold Ga0076948_1001617


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1001617 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52541
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (71.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F043902Metagenome / Metatranscriptome155Y
F085623Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_100161757F007110AGGAGGMICIYCQSVIPAGRAEFLIETNRRATCLSCSSESKAVGFMDWGHKTAPSLVMVPSNATQTIRILDRANRRAR*
Ga0076948_100161792F085623N/AMLEYDLIEIHHNKRLKNKPYLVRVFSYNNSDPHELRLNEDDLKNLYKILKEYKYL*
Ga0076948_100161798F043902GAGGMTVQQLRNMGYKVRVLHNRLYNGYHKWQVGAVESTKHHYGPIDPDSKGGSTQVVIDSPTGEHFQGLAICSKKENYNKKLGVRIAIGRCGIDLLNDVGRNGVKI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.