NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1000364

Scaffold Ga0076948_1000364


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1000364 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98018
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)132 (86.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003439Metagenome / Metatranscriptome486Y
F009065Metagenome / Metatranscriptome323Y
F019997Metagenome / Metatranscriptome226Y
F085204Metagenome / Metatranscriptome111N
F099186Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0076948_100036414F009065GAGGMMSFFKKKPWDKPFSEKVAKRVSRIPTGELEQWIDQALTEVGKCVSMYTKTRDVLYLDEAVKGAEAVHAVTHELHQRMTR*
Ga0076948_100036472F085204AGGAGMAVDRTEEYMPTTDAFATTSVEDRPATPSSNAIQSGWAAAESLTTASGDYPTEFKFNDGEFTVVKFIDQSGPFAIYKQHFLQQKTVGKKSYVSLGPNDPLCTKLGSRPEDKRAFTIAVVTPTAVVRQMLIASPRLYKTLHSAEFSPQGPLTKNFWAISRTGKMQQTVYHLQAIKPRDLMEDYGIDQAFAEAEVAKIKPYERSVIKEHTWEELEEIANSLL*
Ga0076948_10003649F019997AGGAGMNKEQLIAAAGSYIRAALASVVALYMAGQTDPSVLVNAFVAGLVGPLAKALNPKDKAYGIGASK*
Ga0076948_100036491F099186GGAMPGRYSDGTYGRRPWTDDGRQPYHTPEEAAFPPQEYLGPFQSNQDRLLNQAMAVWTMSSEEIQEHVRPNLPQINLFPDRYGYTENELTLEDIVRLPAGREQRVESDYSNTPNTTQSTSRNTLGYGV*
Ga0076948_100036494F003439GGAMATNQSRSLNSDMTEGATDGKYRKRRPNTTVQPGMGDQTVQANRAGLHPYMNYGFINSEEPNKVNPGAN*
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