NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076926_110447

Scaffold Ga0076926_110447


Overview

Basic Information
Taxon OID3300005738 Open in IMG/M
Scaffold IDGa0076926_110447 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2105
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020896Metagenome / Metatranscriptome221N
F050370Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0076926_1104477F050370GGAMYQHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYHSVGHWNNEGTNTDGTTNSVQMREEVWVVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIAARFNYDS*
Ga0076926_1104478F020896AGGAMTNKKTKTEWEINQEQAAATWKSMTPKQQQAVLEMLQAFVPIRQSVSELCDISYDDLRNMDQAWYTLRRLLVDDSVEVKYWNY*

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