Scaffold Ga0076926_109826

Overview

Basic Information

• Taxon OID: 3300005738
• Scaffold ID: Ga0076926_109826
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5313
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048332	Metagenome / Metatranscriptome	148	N
F077338	Metagenome / Metatranscriptome	117	Y
F086331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076926_10982611	F086331	N/A	MKINKMSKEDLINSIEKAENLLNNRRWIKQQTKFWIGVYINHLAKLRNELLKRG*
Ga0076926_10982612	F048332	AGGGGG	MELLKSIKLRQLRKERDLIQANKKAWINLHRKDTLDASLSRTFLAYQRAINKINLAIRNLQND*
Ga0076926_1098267	F077338	GGA	MKYLAILVFVDKKILQVVNLSPSESWVEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSV*