Scaffold Ga0076926_106727

Overview

Basic Information

• Taxon OID: 3300005738
• Scaffold ID: Ga0076926_106727
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019909	Metagenome / Metatranscriptome	227	Y
F020259	Metagenome	225	N
F026537	Metagenome / Metatranscriptome	197	N
F068220	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076926_1067272	F020259	N/A	MIQLKMTERTFTAVADWAERIQMMTQENNLINAQDIVHDVFGMLRDDEHFLPRL*
Ga0076926_1067273	F019909	N/A	MTNFEQHIGHELPQEWIDYINAHTTDELYNQAKKLKFDSWCPILLENDSPELRKHLEEASELLFKYVDYTDSQSVTK*
Ga0076926_1067274	F068220	N/A	MKLYASIHGVCGLAEGYSETTVQFFKTLEQAKEHKARILDLLMKEEHESVVSLSNGMQDTITINDDEAEHEILKIVEVEPLWDTDHFNPANSRTCEWLMWNQMESEAMYDGEYLPTDMGCIKEATDALHGTVESIPMDEWADFVGGIYYRGEAMLDADDVCIHFFRVPKSDTL*
Ga0076926_1067275	F026537	N/A	MKQEIIDRLEYVEETYAGEMETWHDPVTDTYYHVPIEITRRWDESEALINDKANTMTHERKEQHIKQLAFSIQHGASAYATDNFVIEDLPVPQRTGTMTQQDTYSKHKARQIFEAFLEQNPNIND*