Scaffold Ga0076926_106255

Overview

Basic Information

• Taxon OID: 3300005738
• Scaffold ID: Ga0076926_106255
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 777
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F059345	Metagenome	134	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076926_1062552	F003976	GGAGG	MSKLYREYEYEKECIRDTLDKLEMSVRFLNVWVSEPMGLENAKYVLEKNSNRTYDLLDINMVKELVEEEVR*VMV*
Ga0076926_1062553	F059441	GGAGG	MKTWSSTITYTVFDMGRDCETEEEYKEWVKETFILDHNIYLRDDEITNIEREESYNE*
Ga0076926_1062555	F059345	N/A	IKLESIHCALQELQQEFNIPDNHEHLENAFKFTEDLREEQFKQEELI*VI*