NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076926_106255

Scaffold Ga0076926_106255


Overview

Basic Information
Taxon OID3300005738 Open in IMG/M
Scaffold IDGa0076926_106255 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F059345Metagenome134Y
F059441Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0076926_1062552F003976GGAGGMSKLYREYEYEKECIRDTLDKLEMSVRFLNVWVSEPMGLENAKYVLEKNSNRTYDLLDINMVKELVEEEVR*VMV*
Ga0076926_1062553F059441GGAGGMKTWSSTITYTVFDMGRDCETEEEYKEWVKETFILDHNIYLRDDEITNIEREESYNE*
Ga0076926_1062555F059345N/AIKLESIHCALQELQQEFNIPDNHEHLENAFKFTEDLREEQFKQEELI*VI*

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