Scaffold Ga0076927_142121

Overview

Basic Information

• Taxon OID: 3300005737
• Scaffold ID: Ga0076927_142121
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1225
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033221	Metagenome / Metatranscriptome	178	Y
F042572	Metagenome / Metatranscriptome	158	Y
F058106	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076927_1421211	F033221	N/A	VEGDTEKHSNYELIQYELPFPENSILIERDKEAKRVQQLFVTSIKQSLINNNNN*
Ga0076927_1421212	F058106	N/A	MTVLEQQSFIPYTESKSPEERRQYIEEQIALGNPKYKDRNTWLKENADKIRISKLEAQVNEILAKLPK*
Ga0076927_1421214	F042572	AGG	MMLINLVYQEIDRKTMSRNLIVYKVEYRNQSDPWCGRKFIKTKRIVMTPDEVNQTDGYWRNHRNVRNKFYKQMGDNYSVWSVKKA*