Scaffold Ga0076923_120540

Overview

Basic Information

• Taxon OID: 3300005735
• Scaffold ID: Ga0076923_120540
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 757
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020816	Metagenome / Metatranscriptome	222	N
F031261	Metagenome	183	Y
F098031	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076923_1205401	F031261	AGGA	MTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYQGGR*
Ga0076923_1205402	F098031	GGAGG	MKYSVELHVIQLHDVEVEATSYEDARNKAIKEWRNGYIYNDVGSPTFCKEEAKVVSFTSMPTAEEILNRKVYR*
Ga0076923_1205403	F020816	AGGAGG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITKVKTWEEDDEV*